probes: 53

The exact question asked of a corpus, kept verbatim (code column): a Python regex on one document, a SPARQL query on a public endpoint, a shell request. result_count/result_of is the re-run figure on result_date; matches_excerpt says whether that figure is the one quoted in the observation (0 = differs, both kept).

This data as json

id	form_id	form_name	file	kind	corpus_id	written	run	result_count	result_of	result_date	matches_excerpt	note	code
53	form-113	Supplementary material cited and absent	probes/2026-08/line-113.py	python	corpus-europe-pmc-jats-2023-2026	2026-08-08	python3 tools/run_probe.py probes/2026-08/line-113.py <dir with the 272 .xml>	1	272	2026-09-09	1		"""Fault Atlas probe — catalogue line 113 (form-113). Extracted verbatim from the August 2026 observation campaign (Loxyn SAS, Lyon). A probe answers one question on one JATS XML file: "is this fault here, and where?" It repairs nothing and decides nothing. Returns a list of excerpts, empty if absent. Run on the reproducible corpus (see corpora/europe-pmc-jats-2023-2026-272.json): python3 tools/run_probe.py probes/2026-08/line-113.py <dir with the 272 .xml> """ import re, collections, unicodedata SONDES = {} def sonde(ligne, nom): def deco(f): SONDES[ligne] = (nom, f); return f return deco ATTACHE = re.compile(r'<(?:inline-)?supplementary-material\b\|<media\b[^>]xlink:href=') # ── 113 · MATÉRIEL SUPPLÉMENTAIRE CITÉ, mais AUCUN fichier attaché # ⚠️ 1re version CORRIGÉE deux fois. (a) elle ne comptait comme « attaché » que # xlink:href porté par <supplementary-material> — or le fichier pend souvent d'un # <media> imbriqué : 115/272 faux porteurs. (b) « supplementary material » nu, dans # la formule de disponibilité des données, n'est PAS la citation d'un objet : on # exige désormais un objet NOMMÉ (« Supplementary Fig. S1 », « S1 Table »). CITE_SUP = re.compile( r'\b(?:[Ss]upplementary\|[Ss]upplemental\|[Ss]upporting)\s+' r'(?:[Tt]able\|[Ff]igure\|[Ff]ig\.?\|[Ff]ile\|[Dd]ataset\|[Dd]ata\|[Mm]aterial\|' r'[Ii]nformation\|[Mm]ovie\|[Vv]ideo\|[Aa]ppendix\|[Nn]ote\|[Mm]ethod)s?\s(?:S\s?\d+\|\d+)\b' r'\|\bS\d+\s+(?:Table\|Fig(?:ure)?\|File\|Appendix\|Text\|Data\|Movie\|Video)\b' r'\|\b(?:Table\|Fig(?:ure)?)\s*S\d+\b') def _txt(x): return re.sub(r'<[^>]+>', ' ', x) @sonde(113, "objet supplémentaire NOMMÉ, cité, sans aucun fichier attaché") def d113(x): cites = sorted({re.sub(r'\s+', ' ', m.group(0)).strip() for m in CITE_SUP.finditer(_txt(x))}) return cites[:5] if cites and not ATTACHE.search(x) else []