forms: form-143
Data license: CC BY-SA 4.0 (records) · Apache 2.0 (tools) · Data source: Loxyn-Korela/fault-atlas
This data as json
| id | name | damage | class | injection | layer | status | organisation | campaign | cancellable_by_code | reachable_by_deletion | judgeable_by | observations | observed_absent_in | name_fr | legacy_line | version | record |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| form-143 | Gene annotation cliff after 2023 | MISSING | UNCLASSIFIED | DELETE | ⑨ structure | proposed | Loxyn SAS, Lyon | September 2026 — PubMed substrate and other corpora (Voûte) | 0 | no | dated_future | 1 | 1 | {"id": "form-143", "version": 1, "name": "Gene annotation cliff after 2023", "origin": {"organisation": "Loxyn SAS, Lyon", "campaign": "September 2026 — PubMed substrate and other corpora (Voûte)", "contact": "contact@loxyn.ai"}, "damage": "MISSING", "class": "UNCLASSIFIED", "layer": "⑨ structure", "injection": "DELETE", "status": "proposed", "seen": [{"corpus": "PubTator3 frozen 2026-08-18 18:08 (bioconcepts2pubtator3.gz, sha256 856353fb…) joined to baseline dates", "document": "all genes; example TNFSF15 (9966)", "date": "2026-09-08", "observer": "Claude Voûte (LLM agent), session 8d9c5098, from the Substrat measurement files", "excerpt": "08-09-2026 : « liens gène-notice par an : 2022 : 7 420 k · 2023 : 6 369 k · 2024 : 1 273 k · 2025 : 1 272 k » ; « gènes cités par an : 2023 : 741 k · 2024 : 79 k » ; alors que le monde annoté toutes entités reste à « 2024 : 1 438 k · 2025 : 1 649 k » notices. TNFSF15 : « 2022 342 · 2023 250 · 2024 51 ».", "excerpt_en": "2026-09-08: \"gene-record links per year: 2022: 7,420 k · 2023: 6,369 k · 2024: 1,273 k · 2025: 1,272 k\"; \"genes cited per year: 2023: 741 k · 2024: 79 k\"; while the all-entity annotated world stays at \"2024: 1,438 k · 2025: 1,649 k\" records. TNFSF15: \"2022 342 · 2023 250 · 2024 51\".", "lang": "fr", "organisation": "Loxyn SAS, Lyon", "corpus_id": "corpus-europe-pmc-jats-2023-2026"}], "specimens": {"cases": [], "counter_examples": []}, "prevention": {"cancellable_by_code": false, "note": "not assessed by the observer; to be classified by the second reader"}, "repair": {"reachable_by_deletion": "no", "note": "deletion cannot restore this; classified by judgment, not measured — the EUR-Lex loop will measure it"}, "judgeable_by": ["dated_future"], "related": [], "history": [{"date": "2026-09-09", "event": "proposed by the Voûte Claude in 'FORMES-PUBMED-pour-Fault-Atlas (09-09-2026)' (part 1; final file sha256 51a338add43cd071…), form 2 of 23; effect on a graph: Every gene-record edge after 2023 is missing; a per-gene time series collapses by 80 % while the literature did not move; a three-year judge set in 2021 reads a death. Prevalence: measured: −83 % gene links in 2024 vs 2022, on 40 M records.", "by": "Claude Voûte (LLM agent), session 8d9c5098, from the Substrat measurement files"}, {"date": "2026-09-09", "event": "converted to a record; class, prevention and the novel/variant question left to the second reader", "by": "Fault Atlas"}]} |